
  • Staff
  • Students
  • Library
Flinders University Logo Flinders University Logo
  • Study

    Study areas

    • Business
    • Computer science and information technology
    • Creative arts and media
    • Criminology
    • Defence and national security
    • Education
    • Engineering
    • Environment
    • Health
    • Humanities and social sciences
    • Innovation and enterprise
    • International relations and political science
    • Languages, culture and tourism
    • Law
    • Medicine
    • Nursing and midwifery
    • Psychology
    • Science
    • Social work
    • Sport

    I am...

    • a high school student
    • a non-school leaver
    • a future honours student
    • a future postgraduate student
    • a future research student
    • a future online student
    • a future Indigenous student
    • an international student
    • a parent
    • a school counsellor/teacher
    Explore
    Admission pathways
    Apply
    Contact us
  • Study

    Study areas

    • Business
    • Creative arts
    • Education
    • Engineering
    • Environment
    • Government
    • Health sciences
    • Humanities
    • Information technology
    • Law
    • Medicine
    • Nursing
    • Psychology
    • Public health
    • Science
    • Social sciences
    • Social work

    International websites

    • China
    • Vietnam
    Explore Flinders
    Apply
    Contact us
  • Research

    Research areas

    • Engineering and technology
    • Health and medical
    • People and society
    • Science, environment and natural resources
    • Emerging research - Defence

    Fearless Research

    • Research Changing Lives

    I am...

    • a potential collaborator
    • a researcher
    • a potential research student
    • a current research student
    Research@Flinders
    Institutes and centres
    Partner with us
    Participate
  • Research

    Research areas

    • Engineering and technology
    • Health and medical
    • People and society
    • Science, environment and natural resources
    • Emerging research - Defence

    Fearless Research

    • Research Changing Lives

    I am...

    • a potential collaborator
    • a researcher
    • a potential research student
    • a current research student
    Research@Flinders
    Institutes and centres
    Partner with us
    Participate
  • Engage

    I want to...

    • Engage with us
    • Connect with students
    • Locate a clinic
    • Book a campus venue
    • Find a tender
    • Give to Flinders
    • Work at Flinders
    • Participate in a research study
    • See what's on
    • Shop Flinders merchandise
    • Explore Indigenous education

    Related links

    • Flinders New Venture Institute
    • Alumni
    • Health2Go
    • Flinders University Museum of Art
    • Flinders One Sport and Fitness
    Business and government
    Community
    Culture
    International
  • Alumni

    I want to...

    • Join an alumni network
    • Establish an alumni network
    • Share a memory
    • Access career services
    • Order a transcript
    • Give to Flinders
    • Update my details
    • Find a classmate
    • Shop Flinders merchandise
    Our alumni
    Benefits and services
    Get involved
    Stay connected
  • Giving

    Donate today

    • Donate online
    • Donate by mail
    • Giving online FAQs (PDF)
    • Staff Workplace Giving Program
    • Contact us

    Ways to give

    • Give in celebration or in memory
    • Leave a gift in your Will
    • Giving from overseas
    • Give a cultural gift
    • Get involved

    Donate to
    Why give
    Our donors
  • About

    The 2025 agenda

    • Vision and mission
    • Our strategic plan
    • Our values and ethos
    • Flinders Village

    Governance and leadership

    • University Council
    • Chancellor
    • Vice-Chancellor

    Our organisation

    • Colleges
    • Library
    • Professional services
    • Staff directory
    • Sustainability at Flinders

    Campus and locations

    • Bedford Park
    • Tonsley
    • City Campus
    • Flinders in the NT
    • Health and Medical Research Building
    Fast facts
    History
    Structure
    Contact us
  • Staff
  • Students
  • Library
  • You have no saved courses.

    Continue to explore your course options.

     
    Explore our courses

    Your saved courses

    {{{courseName}}}
    mail_outline
    delete
    View all saved courses
  • Quick links 
    • Current students
    • Staff
    • Library
    • Flinders dashboard (Okta)
    • Ask Flinders
    • Flinders Learning Online (FLO)
    • Parking
    • Campus map: Bedford Park
    • Staff directory
    • Jobs at Flinders
    • Shop Flinders merchandise

 
  • Overview 

    Our equipment and resources

    • Materials characterisation
    • Optical microscopy and sample preparation

    Get involved

    • Industry Solutions
    • Education

    Contact

    • News & Events
    • Contact us
  • Materials characterisation 
    • Large-Volume Micro-CT System
    • Scanning Auger Nanoprobe
    • Scanning Electron Microscopy (SEM)
    • Metastable Induced Electron Spectroscopy
    • Neutral Impact Collision Ion Scattering Spectroscopy
    • Atomic Force Microscopy
    • Raman Microscopy
    • X-ray Diffraction
    • Electronic structure simulation & materials modelling
    • Photoemission Electron Microscope
  • Optical microscopy
  • Industry solutions
  • News & Events
  • Education
  • Contact us
FMMA Optical microscopy

Light microscopy and sample preparation

Our light microscopy capabilities provide a range of imaging solutions ideal for imaging biological samples, such as live or fixed cells and tissue sections. We provide support and advice spanning custom sample preparation (including sample preparation equipment, validated reagents and consumables) through to sophisticated 3D image data analysis.

Jump to equipment calendar 

Why use our light microscopy equipment?

  • Light microscopy is used to visualise and analyse morphology, structure and molecular interactions in living cells as well as fixed tissue or inorganic substrates. It is commonly used in all disciplines of biological and biomedical research, including cancer research, neuroscience, immunology, microbiology, marine biology and plant science.
  • Light microscopy is regularly used for simultaneous multiplex analyses of a variety of molecular species by virtue of combining detection of various colourimetric or fluorescent reagents across the visible to far-red spectrum. This enables inter-relationships of up to five different molecular species to be readily assessed in tandem within the same sample. 
  • Confocal microscopes facilitate fluorescence imaging with optical sectioning, thus removing unfocused light giving clearer images and enabling acquisition of 3D data sets. Sophisticated 3D image analysis software can provide detailed morphology and structural inter-relationship data.
  • The lateral resolution of optical microscopy is no longer constrained to diffraction limits of ~200-250 nm. Our Zeiss LSM 880 Confocal Microscope with Fast Airyscan makes routine and live cell imaging with a lateral resolution to 120 nm simple to achieve and improves axial resolution 1.7x. Analysis of proximity between two different molecular species within 10-20 nm is also possible by techniques such as Fluorescence Ligation Proximity Assay and Fluorescence Resonance Energy Transfer (FRET), thus many molecular interactions can be visualised in live cells in real-time. Analysis of diffusion, velocity and stoichiometry can also be quantified in live cell culture systems via a range of mathematical image data analyses.

Our light microscopy equipment

Zeiss LSM 880 Fast Airyscan Confocal Microscope

The Zeiss LSM880 Fast Airyscan laser scanning confocal microscope is capable of near-super resolution imaging of commonly used fluorescence dyes on live cells—as well as fixed samples—without the need for special sample preparation techniques or software deconvolution. This inverted microscope is equipped with environmental control and an auto-refocus device for short and long term live cell imaging and fast spectral data acquisition with on-the-fly spectral unmixing, enabling FRET and FRAP to be assessed in real-time and fluorophores/autofluorescence with overlapping emission spectra to be discerned. This instrument features 405, 458, 488, 514, 561 and 633 nm laser lines; a range of dry, water-immersion and oil-immersion objectives; versatility of imaging speeds; very high sensitivity and signal to noise ratios; 2 flanking PMTs, a single-channel GaAsP detector and a transmitted light detector and; DIC optics; set on an antivibration air-table.

Training requirements

In person training to be completed with relevant staff.

Contact person

Pat Vilimas

Nicholas Eyre

Make a booking

View booking calendar

Olympus VS200 Research Slide Scanner

The VS200 slide scanner is configured for automated imaging of up to 126 slides via fluorescence, brightfield, phase contrast, darkfield and/or polarization microscopy. Various high quality objectives (2x, 4x, 10x, 20x, 40x, 40x oil), fluorescence filters (DAPI, FITC, TRITC, Cy5, Cy7, CFP, YFP, mCherry) and cameras (monochrome and colour CMOS cameras) can be employed. High performance automated ‘count and measure’ and ‘deep learning’ software modules are available and separate data analysis and data storage PC workstations support the VS200 image acquisition system.

Training requirements

In person training to be completed with relevant staff.

Contact person

Pat Vilimas

Nicholas Eyre

Make a booking

View booking calendar

Incucyte SX5 Live-Cell Analysis Instrument (Sartorius)

The Incucyte SX5 Live-Cell Analysis Instrument is contained within a large (230L) cell culture incubator (37°C, 5%CO2) and enables long-term live cell imaging using high definition phase contrast and up to 3 fluorescence channels in a single experiment (green  /orange / near IR) in combination with 4x, 10x or 20x objectives. The system features 3 interchangeable trays that can be used with a large variety of cell culture vessels and up to 6 microplates in parallel. A large number of purpose-built software modules (and relevant accessories) are available for various applications in cell health and proliferation, cell function, 3D cell models, cell movement and morphology (Cell Migration/Invasion, Chemotaxis, Spheroid, Organoid, Cell-by-Cell, Neurotrack, ATP Analysis and Angiogenesis software modules are available.

Training requirements

In person training to be completed with relevant staff.

Contact person

Pat Vilimas

Nicholas Eyre

Make a booking

View booking calendar

Cytation 5 Cell Imaging Multi-Mode Reader (BioTek)

The Cytation 5 combines automated fluorescence and brightfield microscopy and various microplate detection read-outs (fluorescence, luminescence, UV/Vis absorbance, fluorescence polarization and time resolved fluorescence). Imaging can be performed using various plates (including 96- and 384-well plates), slides (including various chamber slides), objectives (4x, 10x, 20x and 40x) and fluorescence filters (DAPI, GFP, Texas Red and Cy5). The dual reagent injector module is also available for use in flash-type luminescence assays and other controlled reagent delivery into microplate wells.  Environmental control (temperature and CO2) enables performance of long-term live cell imaging experiments.

Training requirements

In person training to be completed with relevant staff.

Contact person

Pat Vilimas

Nicholas Eyre

Make a booking

View booking calendar

IX83 Widefield Fluorescence Microscope (Olympus) 

The IX83 widefield fluorescence microscope has been customized for sensitive imaging of fluorescently labelled samples. The system features an iXon Life 888 EMCCD camera (Andor) that is configured for ‘SRRF-Stream+’ super-resolution imaging and enables sensitive imaging with fast frame rates and/or low-light illumination of samples. Illumination is provided by a pE-800 LED light engine (CoolLED) equipped with corresponding fluorescent filters (DAPI, CFP, FITC, YFP, TRITC, mCherry and Cy5). A range of objectives are available (10x, 20x, 40x, 60x, 100x) and live cell imaging (37°C, 5%CO2) is supported using a stage-top incubator (Okolab) and an IX3-ZDC2 motorized Z drift compensator.

Training requirements

In person training to be completed with relevant staff.

Contact person

Pat Vilimas

Nicholas Eyre

Make a booking

View booking calendar

Epifluorescence microscopes

We have a range of compound and inverted epifluorescence microscopes equipped for camera-based digital image acquisition of slide-mounted samples as well as live cell or organoid cultures in a variety of culture dish types. These are set up to image all common blue, green, red and far-red emitting fluorophores with negligible cross-excitation or emission bleed through. These epifluorescence microscopes enable inexpensive screening and imaging of samples with minimum training required.

Training requirements

In person training to be completed with relevant staff.

Contact person

Pat Vilimas

Nicholas Eyre

Make a booking

View booking calendar

Brightfield and stereo microscopes

We have brightfield compound and stereo microscopes equipped for full colour camera-based digital image acquisition, enabling inexpensive imaging of a variety of samples with minimum training required.

Training requirements

In person training to be completed with relevant staff.

Contact person

Pat Vilimas

Nicholas Eyre

Make a booking

View booking calendar

Sample preparation

Comprehensive sample preparation expertise and equipment is available to cater for custom preparation of live cells as well as fresh, frozen and fixed tissue samples. We have automated embedding equipment (Leica HistoCore PEARL) and a range of microtomes, sledge microtomes, ultramicrotomes, vibratomes and cryostats available. We can also provide a range of reagents and consumables, including validated secondary antibodies (enzyme and fluorophore conjugates), routine and specialist colourimetric stains, slides, coverslips and coverglass-bottom chambers/dishes. Researchers can opt for sample preparation to be provided or to be trained to access our sample preparation facilities.

Training requirements

In person training to be completed with relevant staff.

Contact person

Pat Vilimas

Nicholas Eyre

Make a booking

View booking calendar

View all bookings

View Light Microscopy Instrument Monthly Calendar (public link)

View Light Microscopy Instrument Weekly Calendar (public link)

How to book your training

All users of our equipment must be trained by our staff. Before booking, please get in touch about your requirements and arrange a time to complete the relevant training. Once you are an authorised and trained user, you may go ahead and book the equipment using the links.

cmph.microscopy@flinders.edu.au

Our equipment is funded by:

sa-government-logo
ANFF-SA-logo
microscopy-australia-logo

Contact us

Find out more about our team, the equipment and our industry services.

Get in touch

Flinders University Logo

Sturt Rd, Bedford Park
South Australia 5042

South Australia | Northern Territory
Global | Online

Information for

  • Future students
  • Alumni
  • Media
  • Business and community
  • Current students
  • Staff
  • External contractors

Directories

  • Contact us
  • Campus and locations
  • Staff directory
  • Colleges
  • Library
  • Research Institutes and Centres

Follow Flinders

Facebook - Flinders University
Instagram - Flinders University
TikTok - Flinders University
LinkedIn - Flinders University
Twitter - Flinders University
YouTube - Flinders University
Brand SA logo Innovative Research University logo Indigenous communities

Website feedback

Disclaimer

Accessibility

Privacy

CRICOS Provider: 00114A      TEQSA Provider ID: PRV12097      TEQSA category: Australian University

Last Updated: 15 May 2023

FOREVER FEARLESS

This website uses cookies

Flinders University uses cookies to ensure website functionality, personalisation and a variety of purposes as set out in its website privacy statement. This statement explains cookies and their use by Flinders.

If you consent to the use of our cookies then please click the button below:

Accept all cookies and continue

If you do not consent to the use of all our cookies then please click the button below. Clicking this button will result in all cookies being rejected except for those that are required for essential functionality on our website.

Reject all non-essential cookies and continue